Object Property
vcfc:chromAssemblyContig
Associates a record whose CHROM is an angle-bracketed assembly-contig ID with that contig. It is the structured counterpart of vcfc:chromosome, which links a record to a declared reference contig; a record uses one or the other, never both.
Outgoing Relationships
Edges emitted from this term while building the graph and reference views.
| Relation | Target | Target Description |
|---|---|---|
| Domain |
vcfc:VCFRecord
|
One tab-delimited VCF data line. It contains the eight mandatory fixed fields CHROM, POS, ID, REF, ALT, QUAL, FILTER, and INFO; it may additionally contain a FORMAT field and one value block per sample. This is a VCF-centric representation that can link to a sequence-alteration model via vcfc:asSequenceAlteration. |
| Range |
vcfc:AssemblyContig
|
A contig held in the external breakpoint-assembly file named by a '##assembly' line, referenced from CHROM as an angle-bracketed ID such as '<asm1>'. VCF 4.5 fixed field 1 admits this form as an alternative to a reference-sequence name. It is deliberately not a vcfc:ContigHeaderLine: no '##contig' declaration exists for it, and modelling it as one would assert a reference-sequence declaration the file does not make. |
Incoming Relationships
Terms that point at this term in the generated relationship graph.
| Relation | Source | Source Description |
|---|---|---|
| No incoming relationships generated for this term. | ||