Class

vcfc:VCFRecord

One tab-delimited VCF data line. It contains the eight mandatory fixed fields CHROM, POS, ID, REF, ALT, QUAL, FILTER, and INFO; it may additionally contain a FORMAT field and one value block per sample. This is a VCF-centric representation that can link to a sequence-alteration model via vcfc:asSequenceAlteration.

IRI: https://w3id.org/vcf-core/vocab#VCFRecord
Label: VCF record
Declared Types: owl:Class
Primary Source: vcf-core-vocabulary.bundle.ttl
SHACL: vcf-core-vocabulary.shacl.ttl

Outgoing Relationships

Edges emitted from this term while building the graph and reference views.

Relation	Target	Target Description
Subclass Of	`prov:Entity`	prov:Entity

Incoming Relationships

Terms that point at this term in the generated relationship graph.

Relation	Source	Source Description
Range	`vcfc:hasRecord`	Associates a VCF file with one of its tab-delimited data records.
Domain	`vcfc:hasCall`	Associates a VCF record with its vocabulary-level call resource, which groups QUAL, FILTER, INFO, FORMAT, and per-sample call data.
Domain	`vcfc:chromosome`	Links a record to the declared contig corresponding to its CHROM value. The CHROM column identifies a reference sequence (or, for breakpoint assemblies, an angle-bracketed assembly contig ID); a resolvable external reference may also be aligned to FALDO.
Domain	`vcfc:chrom`	The required CHROM fixed-field value: an identifier for the reference sequence on which the record is located, or an angle-bracketed assembly-contig ID for a breakpoint assembly. Records for one CHROM occur in a contiguous block.
Domain	`vcfc:pos`	The required 1-based reference position of the record. It denotes the first base of REF, is numerically ordered within CHROM, and may be 0 or N+1 to indicate a telomere for a contig of length N.
Domain	`vcfc:recordId`	The ID fixed-field value: a semicolon-separated list of unique record identifiers, such as dbSNP rs identifiers. When no identifier is available, VCF uses '.', represented here as '.'^^vcfc:Null.
Domain	`vcfc:ref`	The required reference allele string. It contains one or more A, C, G, T, or N bases and begins at POS. For simple insertions, deletions, and symbolic alleles, VCF uses an adjacent padding base to avoid an empty allele.
Domain	`vcfc:alt`	A lossless raw ALT lexical value. The VCF source serializes ALT as an ordered comma-separated list whose items may be base strings, '', '.', symbolic IDs, '<>', or breakend expressions. Repeated vcfc:alt assertions are unsuitable for per-allele annotation or preserving ALT order; use hasAltAllele and alleleIndex for the structural form.
Domain	`vcfc:recordIndex`	record index
Domain	`vcfc:chromAssemblyContig`	Associates a record whose CHROM is an angle-bracketed assembly-contig ID with that contig. It is the structured counterpart of vcfc:chromosome, which links a record to a declared reference contig; a record uses one or the other, never both.
Domain	`vcfc:hasIdentifier`	has identifier
Domain	`vcfc:hasAltAllele`	has alternate allele
Domain	`vcfc:hasReferenceAllele`	has reference allele
Domain	`vcfc:hasPaddingInterpretation`	Associates a record with the padding interpretation derived for its alleles. At most one interpretation is asserted per record.