Class
vcfc:AssemblyContig
A contig held in the external breakpoint-assembly file named by a '##assembly' line, referenced from CHROM as an angle-bracketed ID such as '<asm1>'. VCF 4.5 fixed field 1 admits this form as an alternative to a reference-sequence name. It is deliberately not a vcfc:ContigHeaderLine: no '##contig' declaration exists for it, and modelling it as one would assert a reference-sequence declaration the file does not make.
Outgoing Relationships
Edges emitted from this term while building the graph and reference views.
| Relation | Target | Target Description |
|---|---|---|
| No outgoing relationships generated for this term. | ||
Incoming Relationships
Terms that point at this term in the generated relationship graph.
| Relation | Source | Source Description |
|---|---|---|
| Domain |
vcfc:assemblyContigId
|
The identifier of a breakpoint-assembly contig with the angle brackets removed, so that '<asm1>' in CHROM yields 'asm1'. The bracketed source token stays available on vcfc:chrom. |
| Range |
vcfc:chromAssemblyContig
|
Associates a record whose CHROM is an angle-bracketed assembly-contig ID with that contig. It is the structured counterpart of vcfc:chromosome, which links a record to a declared reference contig; a record uses one or the other, never both. |
| Domain |
vcfc:declaredInAssembly
|
Links a breakpoint-assembly contig to the '##assembly' header line whose URL names the file that holds its sequence. This is the contig's sequence source; the vocabulary does not fetch or model the sequence itself. |