Object Property
vcfc:declaredInAssembly
Links a breakpoint-assembly contig to the '##assembly' header line whose URL names the file that holds its sequence. This is the contig's sequence source; the vocabulary does not fetch or model the sequence itself.
Outgoing Relationships
Edges emitted from this term while building the graph and reference views.
| Relation | Target | Target Description |
|---|---|---|
| Domain |
vcfc:AssemblyContig
|
A contig held in the external breakpoint-assembly file named by a '##assembly' line, referenced from CHROM as an angle-bracketed ID such as '<asm1>'. VCF 4.5 fixed field 1 admits this form as an alternative to a reference-sequence name. It is deliberately not a vcfc:ContigHeaderLine: no '##contig' declaration exists for it, and modelling it as one would assert a reference-sequence declaration the file does not make. |
| Range |
vcfc:AssemblyHeaderLine
|
The optional ##assembly line that locates a FASTA file containing breakpoint assemblies referenced by BKPTID. |
Incoming Relationships
Terms that point at this term in the generated relationship graph.
| Relation | Source | Source Description |
|---|---|---|
| No incoming relationships generated for this term. | ||