Class
vcfc:AltAllele
One ordered ALT allele, identified by a positive alleleIndex in source ALT order.
Outgoing Relationships
Edges emitted from this term while building the graph and reference views.
| Relation | Target | Target Description |
|---|---|---|
| Subclass Of |
vcfc:Allele
|
An ordered allele participating in one VCF record. alleleIndex is 0 for REF and one-based for ALT, making VCF Number=A and Number=R values directly joinable without parsing the ALT string. |
Incoming Relationships
Terms that point at this term in the generated relationship graph.
| Relation | Source | Source Description |
|---|---|---|
| Range |
vcfc:hasAltAllele
|
has alternate allele |
| Domain |
vcfc:declaredByAlt
|
declared by ALT definition |
| Range |
vcfc:hasLocalAllele
|
has local allele |
| Domain |
vcfc:localAlleleIndex
|
Use localIndex on LocalAlleleMembership for sample-specific ordering. alleleIndex remains the record-global ALT index written in LAA. |
| Range |
vcfc:localAllele
|
local allele |
| Subclass Of |
vcfc:Breakend
|
A parsed bracketed VCF ALT allele representing a novel adjacency or terminus. The source expression remains in alleleValue. |
| Subclass Of |
vcfc:TandemRepeatAllele
|
A <CNV:TR> alternate allele whose repeat sequences and units are represented through the VCF tandem-repeat fields. |
| Domain |
vcfc:svType
|
SV type |
| Domain |
vcfc:svClaim
|
SV claim |
| Domain |
vcfc:posConfidenceInterval
|
Represents CIPOS through FALDO InRangePosition rather than a VCF-specific ConfidenceInterval. |
| Domain |
vcfc:endConfidenceInterval
|
Represents CIEND through FALDO InRangePosition rather than a VCF-specific ConfidenceInterval. |
| Domain |
vcfc:lenConfidenceInterval
|
SVLEN confidence interval |
| Domain |
vcfc:svLength
|
SV length |
| Domain |
vcfc:isImprecise
|
is imprecise |
| Domain |
vcfc:isNovel
|
is novel |
| Range |
vcfc:blockAllele
|
block allele |