Class

vcfc:VariantCall

A vocabulary-level resource that groups the call assessment carried by a VCF record: QUAL, FILTER, INFO, the FORMAT declaration, and sample genotype data. It is an RDF convenience for the contents of a record, not a separate line type in VCF syntax. Since version 1.1.0, genotype data can be represented either as expanded per-sample calls or through one condensed cohort call matrix.

IRI: https://w3id.org/vcf-core/vocab#VariantCall
Label: variant call
Declared Types: owl:Class
Primary Source: vcf-core-vocabulary.bundle.ttl
SHACL: vcf-core-vocabulary.shacl.ttl

Outgoing Relationships

Edges emitted from this term while building the graph and reference views.

Relation	Target	Target Description
Subclass Of	`prov:Entity`	prov:Entity

Incoming Relationships

Terms that point at this term in the generated relationship graph.

Relation	Source	Source Description
Range	`vcfc:hasCall`	Associates a VCF record with its vocabulary-level call resource, which groups QUAL, FILTER, INFO, FORMAT, and per-sample call data.
Domain	`vcfc:hasSampleCall`	Associates a record-level call with the values for one sample. It is used only when the VCF record includes genotype columns. This property is the expanded-profile alternative to vcfc:hasCallMatrix, not a link to a condensed vector.
Domain	`vcfc:hasCallMatrix`	Added in version 1.1.0. Associates a VariantCall with its condensed multi-sample genotype representation. It is the condensed-profile alternative to emitting one vcfc:hasSampleCall assertion per sample.
Domain	`vcfc:hasInfoValue`	Associates a record-level call with one structured annotation parsed from its INFO column.
Domain	`vcfc:qual`	The QUAL fixed-field value: the Phred-scaled quality score for the assertion made in ALT. When ALT is '.', it is -10 log10 P(variant); otherwise it is -10 log10 P(no variant). An unknown score is represented by '.'^^vcfc:Null.
Domain	`vcfc:filter`	The FILTER fixed-field value. 'PASS' means the position passed all filters; otherwise it is a semicolon-separated list of declared filter codes that failed. '.'^^vcfc:Null means filters have not been applied.
Domain	`vcfc:infoRaw`	An optional lossless copy of the INFO fixed-field string. In VCF it is '.' when no annotations are present, or a semicolon-separated series of key[=value[,value...]] entries. Use structured vcfc:InfoFieldValue resources for machine interpretation.
Domain	`vcfc:hasFormatKey`	Associates a record-level call with one key declared in its FORMAT column. The key's position comes from vcfc:fieldIndex and its meaning from vcfc:declaredBy, so the declared order is queryable without reading vcfc:formatRaw.
Domain	`vcfc:formatRaw`	An optional lossless copy of the FORMAT column: the colon-separated, ordered list of keys that determines the meaning of every sample data block in the record. If GT is included, it is the first key; the same field order applies to all samples in the record. Since version 1.1.0, this order also determines how a condensed CohortCallMatrix's FORMAT value vectors are combined for a sample.