Class

vcfc:VCFFile

A Variant Call Format (VCF) file artifact represented as a dataset distribution. In VCF 4.5, the artifact contains meta-information lines, one column-header line, and zero or more tab-delimited data records.

IRI: https://w3id.org/vcf-core/vocab#VCFFile
Label: VCF file
Declared Types: owl:Class
Primary Source: vcf-core-vocabulary.bundle.ttl
SHACL: vcf-core-vocabulary.shacl.ttl

Outgoing Relationships

Edges emitted from this term while building the graph and reference views.

Relation	Target	Target Description
Subclass Of	`dcat:Distribution`	dcat:Distribution
Subclass Of	`prov:Entity`	prov:Entity

Incoming Relationships

Terms that point at this term in the generated relationship graph.

Relation	Source	Source Description
Domain	`vcfc:hasHeader`	Associates a VCF file artifact with the resource that groups its meta-information header lines.
Domain	`vcfc:hasRecord`	Associates a VCF file with one of its tab-delimited data records.
Domain	`vcfc:hasSampleSet`	Added in version 1.1.0. Associates a VCF file with its ordered set of sample columns. The set provides the sample order used by every condensed cohort call matrix in that file.
Domain	`vcfc:representationProfile`	Added in version 1.1.0. Declares the genotype-data representation used by a VCF RDF graph. A converter MUST use vcfc:ExpandedRepresentation when emitting per-sample call resources and vcfc:CondensedRepresentation when emitting cohort call matrices.
Domain	`vcfc:fileFormat`	The VCF version string declared by the required '##fileformat' line, for example 'VCFv4.5'. That line must be the first line of a conforming VCF file.
Domain	`vcfc:fileDate`	A producer-supplied file date, typically derived from an optional '##fileDate' header line. It records file metadata and is not one of VCF 4.5's required fixed fields.
Domain	`vcfc:sourceSoftware`	The program, pipeline, or other source named by an optional '##source' header line.
Domain	`vcfc:referenceGenome`	The reference genome or sequence resource identified by optional reference metadata, commonly a '##reference' header value. VCF 4.5 recommends recording reference and contig metadata to make the records interpretable.
Domain	`vcfc:contigCount`	The number of contig declarations associated with the file. This is a derived RDF convenience, not a separate VCF header field.
Domain	`vcfc:percentEncodingPolicy`	percent-encoding policy
Subclass Of	`vcfc:VCF41File`	An optional explicit VCF 4.1 file type. Use it when the VCF 4.1 SHACL version gate is wanted; VCFFile itself remains version-neutral, and the matching overlay also scopes its rules by fileFormat.
Subclass Of	`vcfc:VCF42File`	An optional explicit VCF 4.2 file type. Use it when the VCF 4.2 SHACL version gate is wanted; VCFFile itself remains version-neutral, and the matching overlay also scopes its rules by fileFormat.
Subclass Of	`vcfc:VCF43File`	An optional explicit VCF 4.3 file type. Use it when the VCF 4.3 SHACL version gate is wanted; VCFFile itself remains version-neutral, and the matching overlay also scopes its rules by fileFormat.
Subclass Of	`vcfc:VCF44File`	An optional explicit VCF 4.4 file type. Use it when the VCF 4.4 SHACL version gate is wanted; VCFFile itself remains version-neutral, and the matching overlay also scopes its rules by fileFormat.
Subclass Of	`vcfc:VCF45File`	An optional explicit VCF 4.5 file type. Use it when the VCF 4.5 SHACL version gate is wanted; VCFFile itself remains version-neutral, and the matching overlay also scopes its rules by fileFormat.