Class
vcfc:SampleCall
The colon-delimited value block for one sample in a genotype-bearing VCF record, represented as structured FORMAT field values. Its field order and meanings are supplied by that record's FORMAT column and corresponding FORMAT declarations. This is the expanded representation retained for single-sample and low-sample VCF files; it MUST NOT be used to represent a vector of values for multiple samples.
Outgoing Relationships
Edges emitted from this term while building the graph and reference views.
| Relation | Target | Target Description |
|---|---|---|
| Subclass Of |
prov:Entity
|
prov:Entity |
Incoming Relationships
Terms that point at this term in the generated relationship graph.
| Relation | Source | Source Description |
|---|---|---|
| Range |
vcfc:hasSampleCall
|
Associates a record-level call with the values for one sample. It is used only when the VCF record includes genotype columns. This property is the expanded-profile alternative to vcfc:hasCallMatrix, not a link to a condensed vector. |
| Domain |
vcfc:forSample
|
Added in version 1.1.0. Optionally links an expanded SampleCall to the reusable VCFSample representing its column. This avoids treating repeated vcfc:sampleId literals as the only sample identity. |
| Domain |
vcfc:hasFormatValue
|
Associates a sample call with one structured value parsed from that sample's FORMAT-ordered data block. |
| Domain |
vcfc:sampleId
|
The sample identifier from the column-header line on an expanded SampleCall. When genotype data is present, VCF places FORMAT after the eight fixed columns and then one uniquely named column per sample. Since version 1.1.0, converters should additionally use vcfc:forSample and VCFSample when reusable sample identity is needed. |
| Domain |
vcfc:sampleFieldsRaw
|
One expanded sample's original colon-separated fields, retaining omitted trailing fields and empty list tokens. |
| Domain |
vcfc:hasGenotype
|
has genotype |
| Domain |
vcfc:sampleFilter
|
The FT value on one SampleCall, preserving PASS, one or more failure codes, or the VCF missing token. |
| Domain |
vcfc:copyNumberQuality
|
copy-number quality |
| Domain |
vcfc:copyNumberLikelihood
|
copy-number likelihood |
| Domain |
vcfc:copyNumberPosterior
|
copy-number posterior |
| Domain |
vcfc:haplotypeId
|
haplotype ID |
| Domain |
vcfc:ancestralHaplotypeId
|
ancestral haplotype ID |